FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949935

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949935
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4123415
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTTGG402337097.57373439248778No Hit
CTATTTGA299770.7269944936417994No Hit
CTAGTTGG98540.2389766734611966No Hit
CTTTTTGG69900.1695196821081555No Hit
CAATTTGG62930.1526162173829217No Hit
CTAATTGG55720.13513071083070707No Hit
CTATTAGG50160.1216467418389854No Hit
CTATATGG47510.11522002999940584No Hit
CGATTTGG42790.10377320740211694No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)