FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949942

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949942
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3920641
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAGCCAC376629596.06324578047314No Hit
TAAGCCCC801902.0453288123039064No Hit
AAAGCCAC155420.39641476993175345No Hit
TAACCCAC103770.2646761078099219No Hit
TAAGCCAA97210.24794414994894967No Hit
TAAGCAAC75230.19188188870136286No Hit
TAATCCAC71970.18356692183752607No Hit
TAAGACAC41640.10620712276385419No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)