FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949945

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949945
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3350106
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT86250.25745454024439823No Hit
GGGGGGGGGGGGGGGG85050.2538725640323023No Hit
TCGCGGTGAGTCTTGA74700.22297801920297447No Hit
GTTAAGAGAGTACGTT68650.20491888913365727No Hit
CGCTTACTGATCACAC57620.17199455778414174No Hit
TACCAGTGATACGATC57410.17136771194702496No Hit
TTGTGGTGAAAGACAT56890.1698155222551167No Hit
ATCTTACTGGTTTGGT56830.1696364234445119No Hit
ATAGATGGAGAGTAAT55120.16453210734227514No Hit
ATTCCTAACTGCGTGC52980.15814424976403732No Hit
ATATGCCGAGAACAGC50090.14951765705323952No Hit
TGGAACACTTGAGGCA48920.14602523024644593No Hit
CTTTCTGCTCTTGTGA46200.13790608416569505No Hit
GCTATACGACAGGTGA45450.13566734903313507No Hit
AGCTCTGCTGGCCTGT44700.1334286139005751No Hit
CTTGACGCTCAGGGTA43790.13071228193973564No Hit
AGGTAGCGATTGACCA43350.1293988906619671No Hit
ACTGGAACTCTGGAAG42880.12799594997889618No Hit
NNNNNNNNNNNNNNNN40260.12017530191581999No Hit
TGTGACTGACCGTTAA39830.11889176043981892No Hit
AGTTCACGACCAGAGA39070.11662317550549146No Hit
TGTACCCTGCTGAGAG38870.11602617947014213No Hit
ACCCTTTCTAGGTGAC38200.11402624275172188No Hit
TTCCAAACTCCGCTAG37890.11310089889693042No Hit
ACATGTGTGTCAATGC36700.10954877248660193No Hit
TCCCAGACTCCTAACA36650.10939952347776459No Hit
ACACTCCACCGTACAT35640.10638469349925046No Hit
TCAGTCCACCCAGCAC35590.10623544449041315No Hit
CAGTGGAGAGATCATC35340.10548919944622648No Hit
GCGGTTCGAAGCAAGC35290.10533995043738914No Hit
CACAGCTCTCTCTGGG34240.10220572125180516No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)