FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949948

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949948
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3350106
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCACCT323569696.58488417978415No Hit
GCGCCCCT320380.9563279490260905No Hit
GCGCACCA243670.7273501196678552No Hit
GCGCACAT65010.1940535612902995No Hit
CCGCACCT55320.16512910337762446No Hit
GCCCACCT51840.15474137236254615No Hit
GCGCACCG50170.14975645546737923No Hit
GCGAACCT44020.13139882738038738No Hit
GCGCAACT40510.12092154696000663No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)