FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949955

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949955
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3299467
Sequences flagged as poor quality0
Sequence length8
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTTGAT325069898.5219127816705No Hit
AAGTTGAA121520.36830191058131506No Hit
AAGTAGAT41620.12614158589857088No Hit
AAGATGAT39330.1192010709608552No Hit
AATTTGAT37280.11298794623495248No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)