FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004949957

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949957
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18209623
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAGCCAC1775723497.51565971464649No Hit
TAAGCCCC1805880.9917174012883189No Hit
AAAGCCAC561150.3081612398016148No Hit
TAAGCCAA383010.21033384381433928No Hit
TAATCCAC325450.17872418336173132No Hit
TAACCCAC267080.14666970315640251No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)