FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004949977

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949977
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences870064
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATGCGA83674796.170741462697No Hit
TCCTGCGA102301.1757755751301053No Hit
TCATGCGC33830.38882197171702315No Hit
TCATGCAA23590.27112948013019733No Hit
TCAAGCGA22540.2590614023795951No Hit
TCATGCCA17810.20469758546497727No Hit
ACATGCGA17300.19883594770039903No Hit
TCATCCGA15920.18297504551389324No Hit
TAATGCGA14350.16493039592489747No Hit
TCATGAGA14310.16447065962963645No Hit
TCTTGCGA9540.10964710641975763No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)