FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949985

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949985
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6828495
Sequences flagged as poor quality0
Sequence length8
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTATTAG667403197.73794957746912No Hit
GCTATTAG250160.36634719656381093No Hit
ACTATTAG157470.23060718357412577No Hit
TCAATTAG144130.21107140006692543No Hit
TCTATTAA142550.20875756663803663No Hit
TCTTTTAG108240.15851223439425524No Hit
TCTAATAG102030.14941799034779993No Hit
TCTATAAG89750.13143452547010726No Hit
TATATTAG87990.1288570907645096No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)