FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004949986

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949986
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540727
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCAGTG52496297.08448070837964No Hit
CATCAGTA21900.4050102916998781No Hit
CATAAGTG15130.27980848006480163No Hit
CAACAGTG14100.2607600508204695No Hit
CATCACTG13150.24319111122618253No Hit
AATCAGTG10030.18549101487441907No Hit
CCTCAGTG9710.1795730562742382No Hit
CATCAGAG9340.17273041664277905No Hit
CATCAGTC8770.1621890528862069No Hit
CATCAGTT7650.14147619778557388No Hit
CTTCAGTG7370.1362979840104156No Hit
CAGCAGTG6870.127051173697633No Hit
CATCATTG6810.12594155646009908No Hit
CATCAGGG6660.1231675133662643No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)