FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949988

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949988
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2742316
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT80750.29445913600037343No Hit
TCGCGGTGAGTCTTGA72610.2647761964704286No Hit
GGGGGGGGGGGGGGGG66300.24176644850556975No Hit
NNNNNNNNNNNNNNNN56270.2051915242444707No Hit
GTTAAGAGAGTACGTT51680.188453847040239No Hit
CGCTTACTGATCACAC48230.17587323999130663No Hit
TACCAGTGATACGATC44990.1640584090236136No Hit
TTGTGGTGAAAGACAT43490.1585885798719039No Hit
ATCTTACTGGTTTGGT43120.1572393553478155No Hit
ATTCCTAACTGCGTGC41820.15249883674966705No Hit
ATATGCCGAGAACAGC40920.14921693925864124No Hit
ATAGATGGAGAGTAAT40310.1469925420702793No Hit
TGGAACACTTGAGGCA36850.13437546949366885No Hit
GCGGTTCGAAGCAAGC35700.1301819338106914No Hit
CTTGACGCTCAGGGTA35260.12857745059285655No Hit
GCTATACGACAGGTGA34670.12642598445985073No Hit
AGGTAGCGATTGACCA34630.12628012234913846No Hit
CTTTCTGCTCTTGTGA34420.12551434626789912No Hit
AGCTCTGCTGGCCTGT33730.12299822485811263No Hit
ACTGGAACTCTGGAAG31580.11515813640732869No Hit
TGTGACTGACCGTTAA31560.11508520535197257No Hit
ACGCTCTTGCCTCAAA30930.11278787710825447No Hit
AGTTCACGACCAGAGA30600.11158451469487835No Hit
TGTACCCTGCTGAGAG30360.1107093420306048No Hit
ACCCTTTCTAGGTGAC30360.1107093420306048No Hit
TTCCAAACTCCGCTAG29230.10658873740298347No Hit
TCAGTCCACCCAGCAC28520.10399968493784086No Hit
ACACTCCACCGTACAT27840.10152002905573244No Hit
ACATGTGTGTCAATGC27830.10148356352805438No Hit
TCCCAGACTCCTAACA27640.10079071850217117No Hit
CACAGCTCTCTCTGGG27440.10006140794860986No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)