FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949996

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949996
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3301214
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTTAC323523098.00122015719066No Hit
CAGCTTAA87510.26508429929110927No Hit
CAGCATAC73600.22294828508542616No Hit
CCGCTTAC64040.19398924153356917No Hit
CAGCTAAC63530.19244435531898266No Hit
AAGCTTAC50540.15309519467686736No Hit
CAGATTAC47520.14394704493559035No Hit
CACCTTAC35520.10759678106296654No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)