FastQCFastQC Report
Fri 9 Sep 2022
EGAF00004949998

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949998
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17015608
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTTATG1661223597.62939414213115No Hit
CCGTTATA636140.3738567555152893No Hit
CCGGTATG556910.327293623595466No Hit
CCGTTTTG403850.23734091664547047No Hit
CCGATATG322740.1896729167714724No Hit
CCGTAATG274840.16152229176882776No Hit
CCGTTAAG215720.12677772078435282No Hit
CCCTTATG174710.10267631929461468No Hit
CAGTTATG170270.10006695029645724No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)