FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949999

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949999
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3377967
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA131170.38831048379099026No Hit
CATTCAACTAGGCATG122370.36225931159185387No Hit
GTCGACCGATGCTCAA120500.35672343749953744No Hit
ACTGGGCACTTCTCGC97040.2872733807050217No Hit
GGGGGGGGGGGGGGGG93520.27685291182536714No Hit
TGTAAGCTGTTGTGAC92890.27498788472474717No Hit
GCTTTAGGAACTAGTC81830.24224629784719626No Hit
NNNNNNNNNNNNNNNN69950.20707721537836218No Hit
TAGTTGCGACATAGCT56970.16865173638463607No Hit
CATCAGTGATTCGCAA53690.15894175401950345No Hit
CAGGAGCCTCGTGCAC47660.1410907803421407No Hit
CAGGAGCCTTCCAATG41570.12306218503614749No Hit
TCCTTAAACAGGGAGG36710.108674833117079No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)