FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004950002

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950002
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1612875
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT301471.869146710067426No Hit
AAATAGGTGTTGCGTA127190.7885918003565062No Hit
GGCTTGCGACGACATT122680.7606293110129427No Hit
TATCACTACTGGTCCG113050.7009222661396575No Hit
ATGGGTTACCATGCGC107790.6683096954196699No Hit
GTGTTGTGAGGGTAGT72760.45111989459815544No Hit
CTAATCTTGCCACTTC68200.422847399829497No Hit
CTGCTTTCTCCACTTC62200.3856467488181043No Hit
AGAGAATTGCCTCCTA59490.3688444547779586No Hit
AGCCGAGCTGCCCTTT46200.28644501278772383No Hit
CTGGCCAGAGGAATGC46100.2858250019375339No Hit
AATGGTGCTTCGTACA42730.264930636286135No Hit
GGGGGGGGGGGGGGGG40630.25191040843214757No Hit
TCCCTGTGACCCGCAA36000.2232039060683562No Hit
GAGAGAAGACTCACGG33290.2064016120282105No Hit
TGCCGTTACAATCTGC30880.19145935053863444No Hit
TTGTCAACTAATACAG30000.1860032550569635No Hit
CTTAATCTGGGAATTA29610.18358521274122297No Hit
GCTGTTCTGATAGGTA28660.17769510966441912No Hit
GTAATCGTGATCCTCC28590.1772611020692862No Hit
TCTTTCCACCGAGTGA28140.17447105324343176No Hit
TCGTATACTTTCTGGA27750.17205301092769124No Hit
TAGCGCGACAAGACAT27440.1701309772921026No Hit
GGGATGTGAAGGTGCA26990.16734092846624815No Hit
AGTCCTGCTCCTAGTA25430.15766875920328607No Hit
GCTCCTAACCTATCTT24880.15425869952724172No Hit
TGCAATGACACCTTGA23590.1462605595597923No Hit
GCAAATCTGGAATTGA22890.14192048360846315No Hit
GTTGTTGGATTCCATT22180.137518406572115No Hit
TTGCGTCACCACTCAA21590.13386034255599474No Hit
TGTCAATCTGGTGTCC20970.13001627528481746No Hit
TACAACCGATCGCTAA20910.12964426877470356No Hit
CCTTTCTACTCGGGCT20900.12958226768968456No Hit
TACGCCTTGCTGATCA20770.12877625358443773No Hit
GGTTGAACTTCTTTGT20110.12468418197318454No Hit
CAAGTGGGATAGCGAG19700.12214213748740603No Hit
CCTTTCTACTCATTTC19480.12077811361698829No Hit
TTGTTTGTGGCGCTGT19160.11879407889638068No Hit
GAGGTGCCTTCGTACA18960.11755405719600094No Hit
AATCCAGACTACCAAC18900.11718205068588701No Hit
TTCCACTCTCGAATCT18570.1151360148802604No Hit
CCCACCTCTCATGATC18540.11495001162520344No Hit
TAAGGGCGATTTCTTG18450.11439200186003255No Hit
AGAACGCGAGGAGTCA18370.11389599317988064No Hit
TCTTTCCACTTCGCAA17970.11141594977912114No Hit
CTGCCATTGTCTTTGT17670.10955591722855149No Hit
GTGGTAACTTTTCCGC17170.1064558629776021No Hit
GAGAGGTTGATGTGGG16580.10279779896148183No Hit
CGGAATTTGAGAGGCT16340.10130977292102611No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)