FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004950004

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950004
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3635426
Sequences flagged as poor quality0
Sequence length8
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAGATTG355417397.76496619653378No Hit
TTAGATTA111040.3054387573835914No Hit
ATAGATTG83480.22962920989177057No Hit
TTAGAATG77770.21392265995787016No Hit
TTAGATTC68540.1885336133922132No Hit
TTACATTG59500.16366720158792944No Hit
TTAGATTT59480.16361218740252173No Hit
TAAGATTG58590.16116405615187876No Hit
TTAGATAG50350.1384982117639033No Hit
TTAGCTTG47240.12994350593300483No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)