FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004950008

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950008
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11391857
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTTGAA1118931698.22205457810786No Hit
CCGTTGAT438220.38467828379517055No Hit
CCGTTAAA379690.3332994787417012No Hit
CCGATGAA175760.1542856445617251No Hit
CCGGTGAA170590.1497473151216698No Hit
CCGTAGAA132560.11636382022702707No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)