FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004950022

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950022
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4090876
Sequences flagged as poor quality0
Sequence length8
%GC74

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACCCA398434597.39588782451484No Hit
CCCCCCCA337850.825862235863419No Hit
CCCACCAA299820.7328992616740277No Hit
CCCACACA52220.12764992143492004No Hit
CCCAACCA50630.12376322332918427No Hit
CACACCCA44350.10841198804363661No Hit
CCCACCCC41570.10161637751914261No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)