FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004950024

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950024
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17202468
Sequences flagged as poor quality0
Sequence length34
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATTAG19050.09.7014311
CTAGGAC27150.09.2815213
TATACTG16800.09.0000485
CGTATAC3857.2759576E-128.7270393
CCTACAC24600.08.5363583
GTACTAG11000.08.5278391
TAGGACC20500.08.3316554
TACACTG29350.08.2521735
CTTACAC22450.08.1690473
ATACCGT5350.08.1122166
AGGACCG18750.08.0640435
GTCTAGA18850.08.0217521
CTAATAC18000.07.9331213
TATACAG22950.07.9303255
CTATACG3403.4158802E-87.823484
GTATAGG13750.07.7386951
TGGACCG11650.07.6910285
CTAGTAC10250.07.64857673
TAGAACT23800.07.58818674
TAGGACA21600.07.58328534