FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004950027

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950027
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29973742
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGCGT2933798297.87894350995614No Hit
AGCTGCGA1063440.35479053633009855No Hit
AGCGGCGT689910.23017146140778816No Hit
AGCTGCGG651760.2174436545160094No Hit
AGCAGCGT416970.13911175988636987No Hit
CGCTGCGT404160.13483801922362582No Hit
TGCTGCGT329790.11002630235490785No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)