FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004950030

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950030
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1661650
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGCATTC163470798.37853940360485No Hit
ATGCATTA65680.3952697619835705No Hit
ATGCAATC32180.19366292540547045No Hit
ATGCATAC28130.16928956158035688No Hit
AAGCATTC17470.10513646074684802No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)