FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004950033

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950033
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5358698
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGAAGA524414997.86237253900107No Hit
CAGGAAGC423590.7904718646208463No Hit
CAGGAATA141660.2643552594305557No Hit
CAGGAAAA83580.1559707227389937No Hit
CACGAAGA67810.12654193238730752No Hit
AAGGAAGA66860.1247691136914228No Hit
CAGGAACA62120.11592368146142963No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)