FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004950035

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950035
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2771758
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACGCGAA268347796.81498168310509No Hit
ACCGCGAA243520.8785759795768606No Hit
AACGCCAA81470.2939289793697718No Hit
AACGCAAA67500.243527753865958No Hit
AACCCGAA63420.22880785407672677No Hit
AACGAGAA56760.20477978236195224No Hit
AACGCGAT41720.150518190982041No Hit
AAAGCGAA36440.1314689089018594No Hit
AACGCTAA36420.13139675253034355No Hit
AACTCGAA31750.11454823978139506No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)