FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004950039

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950039
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2771758
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCGGTGAGTCTTGA78720.28400747828634393No Hit
GGGGGGGGGGGGGGGG73210.2641283979337301No Hit
GGACACCTGGCTCCTT55990.2020017620585924No Hit
GTTAAGAGAGTACGTT49770.17956113051716638No Hit
CGCTTACTGATCACAC49750.17948897414565052No Hit
TACCAGTGATACGATC48450.17479880999712097No Hit
ATCTTACTGGTTTGGT48110.17357215168135168No Hit
TTGTGGTGAAAGACAT46010.16599573267218856No Hit
ATAGATGGAGAGTAAT44710.161305568523659No Hit
ATTCCTAACTGCGTGC43660.15751735901907743No Hit
ATATGCCGAGAACAGC41980.15145622381174692No Hit
TGGAACACTTGAGGCA39540.1426531464868145No Hit
CTTTCTGCTCTTGTGA37990.13706102769433695No Hit
AGCTCTGCTGGCCTGT37950.13691671495130528No Hit
CTTGACGCTCAGGGTA37660.1358704475643256No Hit
ACTGGAACTCTGGAAG35130.1267426665675719No Hit
TGTGACTGACCGTTAA33750.121763876932979No Hit
GCGGTTCGAAGCAAGC32260.11638822725504895No Hit
TGTACCCTGCTGAGAG32190.11613567995474353No Hit
AGTTCACGACCAGAGA31930.1151976471250376No Hit
AGGTAGCGATTGACCA31490.11361020695168915No Hit
ACGCTCTTGCCTCAAA31070.11209492314985652No Hit
ACCCTTTCTAGGTGAC30670.11065179571953974No Hit
TCAGTCCACCCAGCAC30190.10892004280315959No Hit
TTCCAAACTCCGCTAG30080.10852318275982246No Hit
ACATGTGTGTCAATGC30060.10845102638830663No Hit
TCCCAGACTCCTAACA29580.10671927347192649No Hit
CACAGCTCTCTCTGGG28720.10361654949674538No Hit
ACACTCCACCGTACAT28500.10282282941007116No Hit
CAGTGGAGAGATCATC28060.10123538923672269No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)