FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004950040

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950040
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3127711
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACGCGAA304544997.36989766637647No Hit
ACCGCGAA175610.5614649179543763No Hit
AACGCCAA89650.28663134157855374No Hit
AACGCAAA75180.24036747640686754No Hit
AACCCGAA70440.2252126235448224No Hit
AACGAGAA52310.1672469099606709No Hit
AAAGCGAA45980.14700846721452204No Hit
AACGCGAT36700.11733820675887253No Hit
AACTCGAA31540.10084051883310191No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)