FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004950043

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950043
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1614627
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT250691.5526186543393614No Hit
AAATAGGTGTTGCGTA139320.8628618250530927No Hit
GGCTTGCGACGACATT127870.791947613907113No Hit
TATCACTACTGGTCCG118680.7350304435637457No Hit
ATGGGTTACCATGCGC116720.7228914170269666No Hit
GTGTTGTGAGGGTAGT78280.4848178557648299No Hit
CTAATCTTGCCACTTC74680.4625216845748275No Hit
CTGCTTTCTCCACTTC70550.4369430215151859No Hit
AGAGAATTGCCTCCTA64090.3969337809909038No Hit
GGGGGGGGGGGGGGGG52260.32366608510820144No Hit
AGCCGAGCTGCCCTTT49560.30694395671569963No Hit
CTGGCCAGAGGAATGC49210.3047762734055605No Hit
AATGGTGCTTCGTACA45520.2819226979358081No Hit
TCCCTGTGACCCGCAA37790.23404786368616406No Hit
GCTCCTAACCTATCTT35960.22271397666457948No Hit
CTTAATCTGGGAATTA33190.20555831161004987No Hit
TGCCGTTACAATCTGC33060.20475317209485536No Hit
TTGTCAACTAATACAG32580.2017803492695217No Hit
GAGAGAAGACTCACGG32160.19917912929735473No Hit
TCTTTCCACCGAGTGA30160.1867923675251312No Hit
GGGATGTGAAGGTGCA30020.18592529420107554No Hit
GTAATCGTGATCCTCC29910.18524402230360323No Hit
GCTGTTCTGATAGGTA29740.18419114755296426No Hit
TAGCGCGACAAGACAT28340.17552041431240775No Hit
AGTCCTGCTCCTAGTA27410.1697605700883238No Hit
TCGTATACTTTCTGGA27400.1696986362794627No Hit
TGCAATGACACCTTGA24430.1513042950477107No Hit
GTTGTTGGATTCCATT24010.14870307507554378No Hit
TTGCGTCACCACTCAA23860.14777406794262699No Hit
TGTCAATCTGGTGTCC23420.14504898035273783No Hit
GCAAATCTGGAATTGA23240.1439341717932377No Hit
CCTTTCTACTCGGGCT23020.1425716279982931No Hit
TACGCCTTGCTGATCA22550.13966073898182058No Hit
TACAACCGATCGCTAA22460.1391033347020705No Hit
TTGTTTGTGGCGCTGT22250.13780272471598703No Hit
CAAGTGGGATAGCGAG21330.1321048143007642No Hit
AGAACGCGAGGAGTCA20670.12801718291593042No Hit
GGTTGAACTTCTTTGT20220.1252301615171801No Hit
CCCACCTCTCATGATC19950.12355794867792995No Hit
AATCCAGACTACCAAC19800.12262894154501318No Hit
TAAGGGCGATTTCTTG19790.12256700773615208No Hit
CTGCCATTGTCTTTGT19540.12101866251462412No Hit
GAGGTGCCTTCGTACA19280.11940838348423505No Hit
CCTTTCTACTCATTTC19220.11903678063106835No Hit
TTCCACTCTCGAATCT18940.11730263398295705No Hit
GTGGTAACTTTTCCGC18800.1164355606589014No Hit
TCTTTCCACTTCGCAA18620.11532075209940129No Hit
CGGAATTTGAGAGGCT17760.10999444453734515No Hit
GCTCCTAACGAATAGT17640.10925123883101175No Hit
TATTGCTTGTTCGTTT17430.10795062884492827No Hit
GAGAGGTTGATGTGGG17150.10621648219681698No Hit
ATGTGTGTGCCTTTGC16850.10435846793098345No Hit
CTTAGAGACGCTCTTC16830.1042346003132612No Hit
AGCACATTGCTGGAAG16500.10219078462084433No Hit
CCAGCTTTGGGAATGC16450.10188111557653873No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)