FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004950051

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950051
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences862922
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA35240.40837989992142976No Hit
GTCGACCGATGCTCAA31690.3672406080734991No Hit
CATTCAACTAGGCATG30900.3580856670707202No Hit
GGGGGGGGGGGGGGGG30770.35657915779178184No Hit
ACTGGGCACTTCTCGC25740.2982888372297844No Hit
TGTAAGCTGTTGTGAC24940.28901801089785634No Hit
GCTTTAGGAACTAGTC21570.24996465497460954No Hit
TAGTTGCGACATAGCT14110.16351419942938064No Hit
CATCAGTGATTCGCAA13540.1569087356678819No Hit
CAGGAGCCTCGTGCAC12780.1481014506525503No Hit
CAGGAGCCTTCCAATG9930.11507413184505667No Hit
TCCTTAAACAGGGAGG9330.10812101209611066No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)