FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004950066

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950066
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5214644
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTTT506600297.14952736946184No Hit
GCACGTTA501580.9618681543744885No Hit
GCACGGTT174600.33482630837311234No Hit
GCACGTAT111580.21397433842080113No Hit
GCACGATT99080.19000338278125986No Hit
GCACCTTT67140.12875279693110403No Hit
CCACGTTT59930.11492634971821664No Hit
GCTCGTTT55380.1062009218654236No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)