FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004950073

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950073
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences915307
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATCCTT89503197.78478696218865No Hit
TCATCCTA71720.7835622364955146No Hit
TCCTCCTT33240.36315684245832275No Hit
ACATCCTT13100.14312137894717292No Hit
TAATCCTT11600.1267334347929165No Hit
TCAACCTT10680.11668216237830586No Hit
TCATCCAT10650.11635440349522072No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)