FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004950075

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950075
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11828254
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTTGAA1160548198.11660283926943No Hit
CCGTTGAT491980.4159362827345439No Hit
CCGTTAAA389020.32889046853407106No Hit
CCGGTGAA232160.19627579860899166No Hit
CCGATGAA179410.15167919119761886No Hit
CCGTAGAA124340.10512117849346149No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)