FastQCFastQC Report
Mon 12 Sep 2022
EGAF00004950076

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950076
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13349254
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG414890.3107963935662622No Hit
CCTAGCACTACAGGCA276540.20715764341587925No Hit
CGTTCTCGAATAACCC161100.12068090097019654No Hit
CATTCCTCTACGCGAA150270.11256808807443472No Hit
TCGATGATGTCCCGTT140500.10524932704104664No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)