FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004950080

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950080
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13349254
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTAGGTT1310442398.16595743852054No Hit
CGTAGGTA624710.4679737159844288No Hit
CGTAGGGT263910.1976964405651432No Hit
CGAAGGTT225500.1689232971370535No Hit
CGTAGGAT199980.14980612399764062No Hit
CGGAGGTT136020.10189333426422181No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)