FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004950085

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950085
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences942499
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA37960.4027590480202101No Hit
CATTCAACTAGGCATG35200.37347519732116424No Hit
GTCGACCGATGCTCAA34850.36976166552961864No Hit
ACTGGGCACTTCTCGC27650.29336901153210776No Hit
TGTAAGCTGTTGTGAC26920.2856236452240268No Hit
GGGGGGGGGGGGGGGG26150.2774538752826263No Hit
GCTTTAGGAACTAGTC22040.23384640195904718No Hit
TAGTTGCGACATAGCT15830.16795773788619406No Hit
CATCAGTGATTCGCAA15170.16095507793642222No Hit
CAGGAGCCTCGTGCAC12960.13750677719551957No Hit
CAGGAGCCTTCCAATG11100.1177720082461626No Hit
TCCTTAAACAGGGAGG10100.10716191741317498No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)