FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004950089

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950089
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13878741
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTAGGTT1366382598.4514733721164No Hit
CGTAGGTA617460.44489626256445025No Hit
CGAAGGTT205640.14816905942693215No Hit
CGTAGGAT189260.1363668361561038No Hit
CGTAGGGT175700.12659649747768909No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)