FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004950091

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950091
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4397606
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGACG426947697.08636926545944No Hit
ATTGGCCG392510.8925538122332923No Hit
ATTGGACC126220.2870198012282137No Hit
ATTGGACA91000.2069307709694775No Hit
AATGGACG81420.18514619090477866No Hit
ATTGCACG71750.16315695403362646No Hit
ATAGGACG71580.1627703800658813No Hit
ATTGGAAG52910.12031546254939618No Hit
AGTGGACG49950.1135845275815978No Hit
ATTCGACG49790.11322069325901411No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)