FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004950093

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950093
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences839286
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA31820.3791317858274772No Hit
GTCGACCGATGCTCAA28670.3415998837106779No Hit
CATTCAACTAGGCATG26620.31717436011085615No Hit
GGGGGGGGGGGGGGGG23490.2798807557852746No Hit
ACTGGGCACTTCTCGC22780.2714211841970437No Hit
TGTAAGCTGTTGTGAC21070.2510467230479241No Hit
GCTTTAGGAACTAGTC20250.24127651360799535No Hit
TAGTTGCGACATAGCT12230.1457190993296683No Hit
CATCAGTGATTCGCAA12120.14440846147797057No Hit
CAGGAGCCTCGTGCAC10130.12069783125180213No Hit
CAGGAGCCTTCCAATG8820.10508932592703799No Hit
TCCTTAAACAGGGAGG8490.10115741237194473No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)