FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004950103

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950103
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4952021
Sequences flagged as poor quality0
Sequence length8
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAGATTG485378598.01624427683163No Hit
TTAGATTA149180.3012507418688249No Hit
ATAGATTG111550.2252615649247045No Hit
TTAGATTC93080.18796366170498874No Hit
TTAGAATG90560.18287483029655974No Hit
TTACATTG80170.16189349762450522No Hit
TTAGATTT75210.1518773850110894No Hit
TAAGATTG69710.1407708085244388No Hit
TTAGATAG65450.13216826019114217No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)