FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004950109

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950109
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3942551
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCCGGCA387023298.1656800381276No Hit
AACCGGCA110700.280782670915354No Hit
ATCCGCCA83910.21283174269654342No Hit
ATACGGCA81830.20755597074077164No Hit
ATCCGGAA78610.19938866992462492No Hit
ATCCCGCA45690.11588943300923692No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)