FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004950111

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950111
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5678289
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGAAGA555168997.7704551494297No Hit
CAGGAAGC474310.8353044376571886No Hit
CAGGAATA136970.24121702858026423No Hit
CAGGAAAA90320.15906199913389404No Hit
AAGGAAGA76000.13384313478937054No Hit
CACGAAGA73560.1295460657250802No Hit
CAGGAACA69350.12213186049530061No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)