FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004950116

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950116
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3542715
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCTACC343878797.06643068945709No Hit
AGGCTACA196550.5548004849388111No Hit
AGGCTCCC123520.348659149832826No Hit
AGGCAACC106760.30135080016315174No Hit
CGGCTACC78030.22025480457784496No Hit
ACGCTACC57270.16165567933068284No Hit
AGGATACC50140.14152987186381066No Hit
AGTCTACC49790.14054192900078047No Hit
AGGCTAAC42210.11914590928144093No Hit
AGCCTACC41430.11694420804383078No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)