FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004950117

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950117
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3681562
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACCCA347325094.34174950741017No Hit
CCCCCCCA984842.675060205423676No Hit
CCCACCAA307600.8355149254582701No Hit
CCCACACA135080.36690948026951603No Hit
CCCACCCC134880.3663662325936654No Hit
CCAACCCA95560.2595637395214314No Hit
CCCAACCA95470.2593192780672986No Hit
ACCACCCA75550.20521180955257579No Hit
CACACCCA61010.16571770351823492No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)