FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004950125

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950125
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2518151
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACGCGAA246421997.85826981781473No Hit
ACCGCGAA96950.38500471179051615No Hit
AACGCAAA62380.24772144323354714No Hit
AACGCCAA43630.17326204822506672No Hit
AACGAGAA35580.14129414796809245No Hit
AACCCGAA32440.1288246812840056No Hit
AACGCGAT29350.11655377298660802No Hit
AAAGCGAA25560.10150304727556052No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)