FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004950129

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950129
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2518151
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNN74380.29537545603897464No Hit
TCGCGGTGAGTCTTGA69920.2776640479462908No Hit
GGGGGGGGGGGGGGGG69340.2753607706606951No Hit
GGACACCTGGCTCCTT64750.2571331107626191No Hit
GTTAAGAGAGTACGTT47450.1884319089681278No Hit
CGCTTACTGATCACAC45850.18207804059407082No Hit
TACCAGTGATACGATC42320.16805981849380758No Hit
ATCTTACTGGTTTGGT42050.16698760320568545No Hit
ATTCCTAACTGCGTGC41000.16281787708521053No Hit
TTGTGGTGAAAGACAT40910.16246047198916982No Hit
ATAGATGGAGAGTAAT38590.1532473628467872No Hit
ATATGCCGAGAACAGC37390.14848196156624444No Hit
TGGAACACTTGAGGCA35910.1426046333202417No Hit
GCGGTTCGAAGCAAGC32850.1304528600548577No Hit
CTTGACGCTCAGGGTA32800.13025430166816843No Hit
CTTTCTGCTCTTGTGA32750.13005574328147915No Hit
AGCTCTGCTGGCCTGT31920.12675967406243707No Hit
AGGTAGCGATTGACCA30790.12227225452325934No Hit
AGTTCACGACCAGAGA30310.12036609401104223No Hit
TGTGACTGACCGTTAA29650.11774512330674372No Hit
ACTGGAACTCTGGAAG29250.11615665621322946No Hit
ACCCTTTCTAGGTGAC28700.11397251395964737No Hit
GCTATACGACAGGTGA28260.11222520015678171No Hit
TGTACCCTGCTGAGAG28160.11182808338340315No Hit
ACGCTCTTGCCTCAAA28090.11155010164203814No Hit
TTCCAAACTCCGCTAG27540.10936595938845606No Hit
TCAGTCCACCCAGCAC27280.10833345577767178No Hit
ACACTCCACCGTACAT27140.1077774922949418No Hit
CACAGCTCTCTCTGGG26780.10634787191077899No Hit
ACATGTGTGTCAATGC26630.10575219675071114No Hit
TCCCAGACTCCTAACA26610.10567277339603542No Hit
CAGTGGAGAGATCATC25210.10011313856873555No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)