FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004950131

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950131
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6350309
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTATCCC623264798.14714528064698No Hit
TTTATCCA478730.7538688274854026No Hit
TATATCCC96490.15194536202883985No Hit
ATTATCCC84940.1337572707091891No Hit
TTAATCCC77320.12175785461778317No Hit
TTTAACCC72670.1144353762942874No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)