FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004950138

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950138
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6832740
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGCGT666928797.60779716482699No Hit
AGCTGCGG230790.3377707918053372No Hit
AGCTGCGA216940.3175007390885648No Hit
CGCTGCGT200340.2932059466626858No Hit
AGCAGCGT117710.17227349496688005No Hit
AGCGGCGT107570.15743318200312026No Hit
AGATGCGT78480.11485875358933605No Hit
AGGTGCGT78100.11430260773862316No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)