FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004950142

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950142
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3530795
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT522601.4801199163361227No Hit
AAATAGGTGTTGCGTA305670.8657257076664038No Hit
GGCTTGCGACGACATT271160.7679856802788041No Hit
TATCACTACTGGTCCG261770.741391103136829No Hit
ATGGGTTACCATGCGC256740.7271450197476772No Hit
GTGTTGTGAGGGTAGT170570.4830923347291474No Hit
CTAATCTTGCCACTTC164700.46646718373624074No Hit
CTGCTTTCTCCACTTC151800.4299315026785752No Hit
AGAGAATTGCCTCCTA142330.4031103476695759No Hit
GGGGGGGGGGGGGGGG112400.3183419031691163No Hit
AGCCGAGCTGCCCTTT108720.3079193212859993No Hit
CTGGCCAGAGGAATGC108190.30641824291696346No Hit
AATGGTGCTTCGTACA99590.28206112221185314No Hit
TCCCTGTGACCCGCAA82590.2339133254691932No Hit
GCTCCTAACCTATCTT74190.21012264943164358No Hit
TGCCGTTACAATCTGC74000.20958452699746094No Hit
CTTAATCTGGGAATTA71760.203240346720781No Hit
GAGAGAAGACTCACGG70920.20086127911702606No Hit
TTGTCAACTAATACAG70660.20012490104919714No Hit
TCTTTCCACCGAGTGA68760.19474367670737044No Hit
TAGCGCGACAAGACAT63980.1812056491526696No Hit
GGGATGTGAAGGTGCA63850.18083746011875512No Hit
TCGTATACTTTCTGGA63240.17910980388269498No Hit
GCTGTTCTGATAGGTA62750.17772201444717126No Hit
GTAATCGTGATCCTCC62670.17749543658014696No Hit
AGTCCTGCTCCTAGTA59600.16880051093309012No Hit
TGCAATGACACCTTGA54330.15387469394286557No Hit
TTGCGTCACCACTCAA53420.15129737070546434No Hit
GTTGTTGGATTCCATT53320.151014148371684No Hit
TGTCAATCTGGTGTCC52860.14971132563629436No Hit
GCAAATCTGGAATTGA50300.14246083389151734No Hit
TACGCCTTGCTGATCA50220.14223425602449305No Hit
CCTTTCTACTCGGGCT49140.13917545481966526No Hit
TACAACCGATCGCTAA48550.1375044430503612No Hit
TTGTTTGTGGCGCTGT48060.13611665361483744No Hit
CAAGTGGGATAGCGAG47890.13563517564741087No Hit
GGTTGAACTTCTTTGT45670.129347639837487No Hit
CCCACCTCTCATGATC45560.12903609527032864No Hit
AATCCAGACTACCAAC44100.1249010491971355No Hit
TAAGGGCGATTTCTTG43690.12373983762863604No Hit
CTGCCATTGTCTTTGT43430.12300345956080712No Hit
CCTTTCTACTCATTTC42370.12000130282273538No Hit
TTCCACTCTCGAATCT42360.11997298058935735No Hit
AGAACGCGAGGAGTCA41960.11884009125423595No Hit
GAGGTGCCTTCGTACA41290.11694250161790759No Hit
TCTTTCCACTTCGCAA41170.11660263481737115No Hit
GTGGTAACTTTTCCGC40390.1143935006138844No Hit
CGGAATTTGAGAGGCT38830.10997523220691091No Hit
GCTCCTAACGAATAGT37820.10711468663572934No Hit
GAGAGGTTGATGTGGG37360.10581186390033973No Hit
AGCACATTGCTGGAAG37250.10550031933318134No Hit
ATGTGTGTGCCTTTGC36730.1040275631975235No Hit
TATTGCTTGTTCGTTT36290.10278138492888994No Hit
CGTTTGCTGGCTAATC36140.10235655142821942No Hit
AACAGCTACTGGGCAA35620.10088379529256158No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)