FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004950151

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950151
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15726125
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTCAGAC1545271698.2614343965853No Hit
ACTCAGCC761000.4839081464760073No Hit
ACACAGAC396800.2523189914870955No Hit
ACTCAGAA294970.18756686723525343No Hit
ACTCACAC159730.1015698399955488No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)