FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004950157

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950157
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4277044
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT125880.29431541971511166No Hit
TCGCGGTGAGTCTTGA119440.27925829147420506No Hit
GGGGGGGGGGGGGGGG109220.25536328361363597No Hit
GTTAAGAGAGTACGTT82210.19221219141070328No Hit
CGCTTACTGATCACAC77830.18197147375617365No Hit
TACCAGTGATACGATC69480.1624486444376069No Hit
ATCTTACTGGTTTGGT68450.16004043914441843No Hit
TTGTGGTGAAAGACAT67430.15765561448514442No Hit
ATAGATGGAGAGTAAT66440.15534093172761373No Hit
ATTCCTAACTGCGTGC64960.15188059790827496No Hit
ATATGCCGAGAACAGC63130.14760194190193038No Hit
TGGAACACTTGAGGCA59490.13909139115707017No Hit
GCGGTTCGAAGCAAGC58680.13719755980999962No Hit
CTTGACGCTCAGGGTA57790.13511668339161345No Hit
GCTATACGACAGGTGA56110.13118873689398566No Hit
AGGTAGCGATTGACCA54830.1281960157529359No Hit
AGCTCTGCTGGCCTGT53710.12557738475451738No Hit
CTTTCTGCTCTTGTGA53320.12466554003185377No Hit
TGTGACTGACCGTTAA50980.11919447169587219No Hit
ACTGGAACTCTGGAAG49560.11587442168002013No Hit
AGTTCACGACCAGAGA49280.1152197639304155No Hit
ACCCTTTCTAGGTGAC48590.11360650019031837No Hit
ACGCTCTTGCCTCAAA48140.11255437166416805No Hit
TGTACCCTGCTGAGAG47750.11164252694150446No Hit
ACACTCCACCGTACAT45650.10673259381946971No Hit
TTCCAAACTCCGCTAG45190.10565708465940496No Hit
TCAGTCCACCCAGCAC44850.10486214310631362No Hit
TCCCAGACTCCTAACA44700.10451143359759683No Hit
ACATGTGTGTCAATGC44460.10395029838365002No Hit
CACAGCTCTCTCTGGG43510.10172913816177714No Hit
CAGTGGAGAGATCATC43130.10084067407302802No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)