FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004950165

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950165
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7270770
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGAGCA703074496.6987540521843No Hit
GTGGCGCA755421.0389821160619852No Hit
GGGGAGCA711370.9783970611090711No Hit
GAGGAGCA104570.14382245621852982No Hit
GTGGAGAA85500.11759414752495266No Hit
GTGTAGCA72890.10025072997770525No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)