FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004950170

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950170
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2471246
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTAGATC243948698.71481835478944Illumina Single End PCR Primer 1 (100% over 8bp)
TGTAGATA67360.2725750491857144No Hit
TGTAGCTC34300.13879638044937656No Hit
TATAGATC32680.13224098288879377No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)