FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004950174

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950174
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2386139
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG72920.3055982907952973No Hit
GGACACCTGGCTCCTT72130.3022875029493252No Hit
TCGCGGTGAGTCTTGA64460.27014352474855824No Hit
GTTAAGAGAGTACGTT46650.19550411773999757No Hit
CGCTTACTGATCACAC43560.18255432730448645No Hit
TACCAGTGATACGATC39180.16419831367745133No Hit
ATCTTACTGGTTTGGT37690.15795391634770647No Hit
ATAGATGGAGAGTAAT37430.15686428996801946No Hit
TTGTGGTGAAAGACAT37190.15585848100215452No Hit
ATTCCTAACTGCGTGC35980.15078752746591878No Hit
ATATGCCGAGAACAGC34830.1459680261711493No Hit
TGGAACACTTGAGGCA33330.13968172013449343No Hit
CTTGACGCTCAGGGTA31860.13352114021857067No Hit
GCGGTTCGAAGCAAGC31110.13037798720024274No Hit
AGGTAGCGATTGACCA31070.13021035237259856No Hit
CTTTCTGCTCTTGTGA30660.12849209538924597No Hit
AGCTCTGCTGGCCTGT30460.1276539212510252No Hit
GCTATACGACAGGTGA29540.12379832021520959No Hit
AGTTCACGACCAGAGA29380.12312778090463297No Hit
TGTGACTGACCGTTAA29270.12266678512861152No Hit
ACGCTCTTGCCTCAAA27200.11399168279802643No Hit
ACCCTTTCTAGGTGAC27190.1139497740911154No Hit
ACTGGAACTCTGGAAG26640.11164479521100824No Hit
TGTACCCTGCTGAGAG26040.10913027279634589No Hit
ACATGTGTGTCAATGC25850.10833400736503615No Hit
ACACTCCACCGTACAT25750.10791492029592577No Hit
TCAGTCCACCCAGCAC25210.10565185012272964No Hit
TTCCAAACTCCGCTAG24800.10393359313937704No Hit
CACAGCTCTCTCTGGG24520.10276014934586794No Hit
GGGAGCTCTTGATGAA24220.10150288813853678No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)